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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.21

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-04-11, 13:07 EDT based on data in: /work/gmgi/Fisheries/epiage/haddock/methylation/meth_extracted


        General Statistics

        Showing 68/68 rows and 4/4 columns.
        Sample Name% mCpG% mCHG% mCHHM C's
        Mae-263_S1_R1_001_val_1
        63.8%
        1.6%
        11.4%
        1274.3
        Mae-266_S2_R1_001_val_1
        64.6%
        1.8%
        13.1%
        1254.6
        Mae-274_S3_R1_001_val_1
        64.6%
        1.1%
        11.4%
        1031.6
        Mae-278_S4_R1_001_val_1
        65.5%
        1.2%
        11.3%
        1028.5
        Mae-281_S5_R1_001_val_1
        63.1%
        1.2%
        13.9%
        1245.9
        Mae-285_S6_R1_001_val_1
        61.2%
        1.7%
        24.7%
        651.8
        Mae-293_S7_R1_001_val_1
        63.7%
        1.2%
        10.0%
        1159.0
        Mae-294_S8_R1_001_val_1
        66.4%
        1.2%
        10.7%
        1408.5
        Mae-295_S9_R1_001_val_1
        64.6%
        1.2%
        11.0%
        844.0
        Mae-298_S10_R1_001_val_1
        64.0%
        1.4%
        13.2%
        1115.1
        Mae-302_S11_R1_001_val_1
        63.9%
        1.3%
        14.1%
        690.5
        Mae-305_S12_R1_001_val_1
        63.4%
        1.2%
        17.3%
        945.6
        Mae-310_S13_R1_001_val_1
        63.6%
        1.3%
        12.4%
        1166.6
        Mae-311_S14_R1_001_val_1
        63.8%
        1.2%
        10.0%
        1405.8
        Mae-317_S15_R1_001_val_1
        65.3%
        1.2%
        9.3%
        1021.1
        Mae-322_S16_R1_001_val_1
        64.6%
        1.2%
        11.2%
        1437.5
        Mae-327_S17_R1_001_val_1
        64.4%
        1.1%
        10.6%
        717.8
        Mae-329_S18_R1_001_val_1
        64.2%
        1.1%
        10.0%
        1072.5
        Mae-330_S19_R1_001_val_1
        64.2%
        1.2%
        12.8%
        1544.6
        Mae-338_S20_R1_001_val_1
        65.0%
        1.4%
        9.5%
        1423.7
        Mae-342_S21_R1_001_val_1
        63.0%
        1.2%
        9.7%
        1565.1
        Mae-343_S22_R1_001_val_1
        64.0%
        1.3%
        11.7%
        1642.0
        Mae-344_S23_R1_001_val_1
        63.9%
        1.4%
        14.6%
        1480.9
        Mae-350_S24_R1_001_val_1
        65.4%
        1.4%
        23.0%
        1110.0
        Mae-352_S25_R1_001_val_1
        62.8%
        1.4%
        14.0%
        916.3
        Mae-356_S26_R1_001_val_1
        63.7%
        1.3%
        12.0%
        1059.6
        Mae-368_S27_R1_001_val_1
        65.6%
        1.2%
        10.3%
        992.2
        Mae-371_S28_R1_001_val_1
        62.8%
        1.1%
        9.7%
        893.4
        Mae-378_S29_R1_001_val_1
        63.3%
        1.3%
        10.1%
        707.5
        Mae-390_S32_R1_001_val_1
        64.9%
        1.2%
        12.8%
        1481.3
        Mae-396_S33_R1_001_val_1
        66.2%
        1.3%
        9.8%
        895.0
        Mae-399_S34_R1_001_val_1
        65.7%
        1.3%
        9.6%
        992.6
        Mae-403_S35_R1_001_val_1
        65.5%
        1.4%
        9.3%
        829.2
        Mae-405_S36_R1_001_val_1
        64.6%
        1.1%
        8.8%
        728.7
        Mae-410_S37_R1_001_val_1
        64.8%
        1.4%
        11.0%
        702.1
        Mae-414_S38_R1_001_val_1
        64.3%
        1.4%
        12.3%
        726.6
        Mae-421_S39_R1_001_val_1
        64.9%
        1.3%
        14.6%
        835.0
        Mae-422_S40_R1_001_val_1
        63.7%
        1.8%
        13.5%
        600.0
        Mae-424_S41_R1_001_val_1
        61.8%
        1.6%
        20.5%
        574.0
        Mae-428_S42_R1_001_val_1
        63.5%
        1.3%
        12.3%
        881.3
        Mae-432_S43_R1_001_val_1
        66.1%
        1.3%
        11.1%
        987.9
        Mae-436_S44_R1_001_val_1
        65.5%
        1.4%
        9.3%
        1141.8
        Mae-440_S45_R1_001_val_1
        64.4%
        1.5%
        12.1%
        917.2
        Mae-441_S46_R1_001_val_1
        64.3%
        1.3%
        13.6%
        926.0
        Mae-449_S48_R1_001_val_1
        64.5%
        1.4%
        11.0%
        1490.3
        Mae-454_S49_R1_001_val_1
        65.6%
        1.3%
        9.3%
        745.4
        Mae-464_S50_R1_001_val_1
        64.8%
        1.3%
        12.0%
        609.3
        Mae-468_S51_R1_001_val_1
        63.8%
        1.4%
        12.1%
        1148.4
        Mae-470_S52_R1_001_val_1
        63.6%
        1.4%
        11.2%
        785.7
        Mae-474_S57_R1_001_val_1
        65.2%
        1.3%
        12.8%
        1315.9
        Mae-475_S53_R1_001_val_1
        65.1%
        1.2%
        9.7%
        1063.2
        Mae-477_S54_R1_001_val_1
        67.2%
        1.3%
        13.3%
        1133.9
        Mae-481_S55_R1_001_val_1
        63.6%
        1.3%
        12.0%
        1471.5
        Mae-488_S56_R1_001_val_1
        63.7%
        1.1%
        9.1%
        1156.0
        Mae-495_S47_R1_001_val_1
        63.6%
        1.3%
        11.2%
        799.3
        Mae-496_S58_R1_001_val_1
        64.1%
        1.3%
        9.6%
        1005.8
        Mae-499_S59_R1_001_val_1
        68.1%
        1.1%
        12.8%
        1337.5
        Mae-501_S60_R1_001_val_1
        66.1%
        1.2%
        10.6%
        1439.3
        Mae-502_S61_R1_001_val_1
        66.5%
        1.1%
        11.0%
        1183.7
        Mae-509_S62_R1_001_val_1
        64.7%
        1.3%
        9.4%
        1543.3
        Mae-512_S63_R1_001_val_1
        64.1%
        1.4%
        10.6%
        1506.7
        Mae-519_S64_R1_001_val_1
        63.8%
        1.2%
        14.4%
        1034.8
        Mae-520_S65_R1_001_val_1
        65.1%
        1.3%
        12.9%
        1032.3
        Mae-524_S66_R1_001_val_1
        64.6%
        1.1%
        9.7%
        1174.0
        Mae-525_S67_R1_001_val_1
        66.1%
        1.3%
        9.4%
        1536.9
        Mae-533_S68_R1_001_val_1
        65.3%
        1.2%
        11.5%
        1649.9
        Mae-535_S69_R1_001_val_1
        64.1%
        1.2%
        12.7%
        1587.4
        Mae-537_S70_R1_001_val_1
        61.3%
        1.4%
        10.9%
        1815.4

        Bismark

        Version: 0.24.2

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.DOI: 10.1093/bioinformatics/btr167.

        Cytosine Methylation

        Created with MultiQC

        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

        Created with MultiQC

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        SoftwareVersion
        Bismark0.24.2